public:jlab:jupyter
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public:jlab:jupyter [2021/10/06 07:29] – created sjanssen | public:jlab:jupyter [2021/10/06 13:19] (current) – sjanssen | ||
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+ | I assume you just got a fresh clean BCF account to our system. What follows is a step by step guide on how to set up your account to work through our jupyter hub/lab and one or multiple conda environments: | ||
+ | - ssh into our system | ||
+ | - you might have to set proxy information < | ||
+ | - install Miniconda3: [[https:// | ||
+ | - using default install prefix is fine | ||
+ | - allow conda to **init**ialize your shell, which should be bash | ||
+ | - either log out and ssh into the system again OR reload environment via < | ||
+ | - install '' | ||
+ | - create a new subdirectory < | ||
+ | - change into this new directory < | ||
+ | - clone the repository < | ||
+ | - change into the newly cloned directory < | ||
+ | - install necessary dependencies and make sure you do so for the system python version < | ||
+ | - install '' | ||
+ | - install Qiime2 | ||
+ | - change into your home directory< | ||
+ | - follow [[https:// | ||
+ | - install " | ||
+ | - create a jupyter configuration file < | ||
+ | { | ||
+ | " | ||
+ | " | ||
+ | } | ||
+ | } | ||
+ | </ | ||
+ | - in your base environment execute < | ||
+ | - you should be done! Log in to [[https:// |
public/jlab/jupyter.txt · Last modified: 2021/10/06 13:19 by sjanssen